Transcript: ENST00000492534.1 RAB7L1-004

Description

RAB7, member RAS oncogene family-like 1 [Source:HGNC Symbol;Acc:9789]

Gene Synonyms

RAB7L

Location

Chromosome 1: 205,740,190-205,744,279 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1869 variant alleles and maps to 311 oligo probes.

Gene

This transcript is a product of gene ENSG00000117280.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000367139.3	RAB7L1-001	3272	203aa	ENSP00000356107.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1459	E9PL56 O14966 Q6FGU7	NM_003929.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000235932.4	RAB7L1-002	1723	203aa	ENSP00000235932.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1459	E9PL56 O14966 Q6FGU7	NM_001135662.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000446390.2	RAB7L1-008	1441	179aa	ENSP00000389899.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44301	O14966	NM_001135663.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437324.2	RAB7L1-007	1306	131aa	ENSP00000416613.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44302	O14966	NM_001135664.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000414729.1	RAB7L1-003	1157	203aa	ENSP00000402910.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1459	E9PL56 O14966 Q6FGU7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528078.1	RAB7L1-006	1571	42aa	ENSP00000431483.1	Nonsense mediated decay		E9PL56	-	-
ENST00000468887.1	RAB7L1-005	583	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000533111.1	RAB7L1-009	209	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492534.1	RAB7L1-004	906	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 906 bps,

Version

ENST00000492534.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000087735 (version 1)

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Transcript: ENST00000492534.1 RAB7L1-004

Summary