Transcript: ENST00000403076.1 SDC1-002

Description

syndecan 1 [Source:HGNC Symbol;Acc:10658]

Gene Synonyms

CD138, SDC, SYND1, syndecan

Location

Chromosome 2: 20,401,247-20,424,857 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 11177 variant alleles and maps to 396 oligo probes.

Gene

This transcript is a product of gene ENSG00000115884.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381150.1	SDC1-201	3291	310aa	ENSP00000370542.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1697	P18827	NM_001006946.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000254351.4	SDC1-001	3147	310aa	ENSP00000254351.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1697	P18827	NM_002997.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000403076.1	SDC1-002	1523	169aa	ENSP00000384613.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PHH3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429035.1	SDC1-005	646	215aa	ENSP00000400773.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C1K4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000447124.1	SDC1-004	591	28aa	ENSP00000390201.1	Nonsense mediated decay		F8WCX9	-	-
ENST00000482879.1	SDC1-003	1100	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,523 bps, Translation length: 169 residues

Version

ENST00000403076.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000323931 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000403076.1 SDC1-002

Summary