Transcript: ENST00000234111.4 ODC1-001

Description

ornithine decarboxylase 1 [Source:HGNC Symbol;Acc:8109]

Gene Synonyms

ODC

Location

About this transcript

This transcript has 12 exons, is annotated with 22 domains and features, is associated with 4271 variant alleles and maps to 581 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000234111.4	ODC1-001	2653	461aa	ENSP00000234111.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1672	C9JG30 P11926	NM_002539.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000405333.1	ODC1-002	1943	461aa	ENSP00000385333.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1672	C9JG30 P11926	NM_001287189.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000443218.1	ODC1-003	494	68aa	ENSP00000390691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JG30	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000446285.1	ODC1-004	665	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 10, Transcript length: 2,653 bps, Translation length: 461 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P11926

CCDS

This transcript is a member of the Human CCDS set: CCDS1672

Version

ENST00000234111.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000206896 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.