Transcript: ENST00000431187.1 INO80B-007

Description

INO80 complex subunit B [Source:HGNC Symbol;Acc:13324]

Gene Synonyms

HMGA1L4, HMGIYL4, IES2, PAP-1BP, PAPA-1, PAPA1, ZNHIT4, hIes2

Location

Chromosome 2: 74,682,214-74,684,494 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 1161 variant alleles and maps to 481 oligo probes.

Gene

This transcript is a product of gene ENSG00000115274.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000233331.7	INO80B-001	1261	356aa	ENSP00000233331.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1942	B4DJ22 Q9C086	NM_031288.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409917.1	INO80B-006	796	184aa	ENSP00000387267.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZ93	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409493.2	INO80B-010	623	207aa	ENSP00000386937.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZH7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000431187.1	INO80B-007	559	176aa	ENSP00000389887.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JKY0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000452361.1	INO80B-002	2040	363aa	ENSP00000388677.1	Nonsense mediated decay		B4DJ22 J3KQ70	-	-
ENST00000441673.1	INO80B-003	1668	263aa	ENSP00000392498.1	Nonsense mediated decay		F8WCL7	-	-
ENST00000455562.1	INO80B-012	617	97aa	ENSP00000398740.1	Nonsense mediated decay		H7C171	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000469849.1	INO80B-011	689	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494986.1	INO80B-005	615	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471577.1	INO80B-004	818	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473618.1	INO80B-008	779	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 559 bps, Translation length: 176 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000431187.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000328416 (version 1)

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Transcript: ENST00000431187.1 INO80B-007

Summary