Transcript: ENST00000421512.1 TBP-004

Description

TATA box binding protein [Source:HGNC Symbol;Acc:11588]

Gene Synonyms

GTF2D, GTF2D1, HDL4, SCA17, TF2D, TFIID

Location

Chromosome 6: 170,863,390-170,876,045 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 11 domains and features, is associated with 5630 variant alleles and maps to 325 oligo probes.

Gene

This transcript is a product of gene ENSG00000112592.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392092.2	TBP-201	1903	339aa	ENSP00000375942.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5315	B4DPC1 C0LUL1 D2CT63 D2CT64 D2CT65 D2CT66 P20226 Q32MN7 Q7Z6S4 Q7Z6S5	NM_003194.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000230354.6	TBP-001	1861	339aa	ENSP00000230354.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5315	B4DPC1 C0LUL1 D2CT63 D2CT64 D2CT65 D2CT66 P20226 Q32MN7 Q7Z6S4 Q7Z6S5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540980.1	TBP-202	1701	319aa	ENSP00000442132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55077	P20226	NM_001172085.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421512.1	TBP-004	935	208aa	ENSP00000400008.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C0LUL1 D2CT63 D2CT64 D2CT65 D2CT66 Q7Z6S4 Q7Z6S5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000446829.1	TBP-002	892	101aa	ENSP00000404905.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000423353.1	TBP-003	703	150aa	ENSP00000416482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D2CT63 D2CT64 D2CT65 D2CT66 Q7Z6S4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 935 bps, Translation length: 208 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000421512.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000043272 (version 1)

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Recent locations

Transcript: ENST00000421512.1 TBP-004

Summary