Transcript: ENST00000418178.2 MDGA1-012

Description

MAM domain containing glycosylphosphatidylinositol anchor 1 [Source:HGNC Symbol;Acc:19267]

Gene Synonyms

GPIM, MAMDC3

Location

Chromosome 6: 37,606,431-37,614,150 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 3488 variant alleles and maps to 173 oligo probes.

Gene

This transcript is a product of gene ENSG00000112139.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000434837.3	MDGA1-001	8898	955aa	ENSP00000402584.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47417	D6RFG6 D6RHU8 Q8NFP4	NM_153487.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000297153.7	MDGA1-201	8919	959aa	ENSP00000297153.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RFG6 D6RHU8 J3KNB7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000505425.1	MDGA1-003	3021	973aa	ENSP00000422042.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RFG6 D6RHU8 Q8NFP4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000515437.1	MDGA1-007	594	129aa	ENSP00000421510.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RFG6 D6RHU8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000508399.1	MDGA1-008	542	77aa	ENSP00000427645.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RHU8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000418178.2	MDGA1-012	478	159aa	ENSP00000393330.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000502298.1	MDGA1-010	582	87aa	ENSP00000425911.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000510077.1	MDGA1-009	655	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000503419.1	MDGA1-011	201	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000373401.2	MDGA1-005	5120	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478143.2	MDGA1-002	2430	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 478 bps, Translation length: 159 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000418178.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000370518 (version 1)

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Transcript: ENST00000418178.2 MDGA1-012

Summary