Transcript: ENST00000544370.1 SLCO1B3-005

Description

solute carrier organic anion transporter family, member 1B3 [Source:HGNC Symbol;Acc:10961]

Gene Synonyms

HBLRR, LST-2, LST-3TM13, LST2, LST3, OATP-8, OATP1B3, OATP8, SLC21A8

Location

Chromosome 12: 21,015,393-21,055,267 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 22 domains and features, is associated with 18735 variant alleles and maps to 235 oligo probes.

Gene

This transcript is a product of gene ENSG00000111700.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381545.3	SLCO1B3-001	2805	702aa	ENSP00000370956.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8684	F5H8K0 Q9NPD5	NM_019844.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000261196.2	SLCO1B3-201	2712	702aa	ENSP00000261196.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8684	F5H8K0 Q9NPD5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553473.1	SLCO1B3-202	2247	748aa	ENSP00000451758.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H8K0 Q5JAR4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544370.1	SLCO1B3-005	1771	479aa	ENSP00000443225.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YGG9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000540853.1	SLCO1B3-003	1002	291aa	ENSP00000442000.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H8K0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000545880.1	SLCO1B3-004	339	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,771 bps, Translation length: 479 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000544370.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000402065 (version 1)

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Transcript: ENST00000544370.1 SLCO1B3-005

Summary