Transcript: ENST00000546664.1 ACSS3-006

Description

acyl-CoA synthetase short-chain family member 3 [Source:HGNC Symbol;Acc:24723]

Gene Synonyms

FLJ21963

Location

Chromosome 12: 81,568,611-81,613,810 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 20675 variant alleles and maps to 83 oligo probes.

Gene

This transcript is a product of gene ENSG00000111058.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000548058.1	ACSS3-001	4803	686aa	ENSP00000449535.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9022	F8VZB4 Q9H6R3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000261206.3	ACSS3-002	2666	685aa	ENSP00000261206.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VZB4	NM_024560.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548324.1	ACSS3-003	2214	368aa	ENSP00000448965.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9H6R3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549175.1	ACSS3-007	534	93aa	ENSP00000447748.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VZB4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000546664.1	ACSS3-006	379	75aa	ENSP00000449507.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000551745.1	ACSS3-005	864	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000548387.1	ACSS3-004	741	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 379 bps, Translation length: 75 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000546664.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000407799 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000546664.1 ACSS3-006

Summary