Transcript: ENST00000264025.3 PVRL1-002

Description

poliovirus receptor-related 1 (herpesvirus entry mediator C) [Source:HGNC Symbol;Acc:9706]

Gene Synonyms

CD111, CLPED1, ED4, HIgR, HVEC, OFC7, PRR, PRR1, PVRR, PVRR1, SK-12, nectin-1

Location

Chromosome 11: 119,531,702-119,599,794 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 25 domains and features, is associated with 29179 variant alleles and maps to 509 oligo probes.

Gene

This transcript is a product of gene ENSG00000110400.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264025.3	PVRL1-002	5840	517aa	ENSP00000264025.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8426	Q15223 Q6SYC2	NM_002855.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000341398.2	PVRL1-001	1377	458aa	ENSP00000344974.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8425	Q15223 Q6SYC0 Q6SYC2	NM_203285.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000340882.2	PVRL1-003	1059	352aa	ENSP00000345289.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8427	Q15223 Q6SYC2	NM_203286.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524510.1	PVRL1-004	832	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531468.1	PVRL1-007	589	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000524429.2	PVRL1-005	777	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000532197.1	PVRL1-006	452	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 5,840 bps, Translation length: 517 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15223

CCDS

This transcript is a member of the Human CCDS set: CCDS8426

Version

ENST00000264025.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000388231 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000264025.3 PVRL1-002

Summary