Transcript: ENST00000509891.1 RAPGEF2-012

Description

Rap guanine nucleotide exchange factor (GEF) 2 [Source:HGNC Symbol;Acc:16854]

Gene Synonyms

CNrasGEF, DKFZP586O1422, KIAA0313, NRAPGEP, PDZ-GEF1, PDZGEF1, RA-GEF, RA-GEF-1, Rap-GEP, nRap GEP

Location

Chromosome 4: 160,273,609-160,274,721 forward strand.

About this transcript

This transcript has 2 exons, is associated with 537 variant alleles and maps to 71 oligo probes.

Gene

This transcript is a product of gene ENSG00000109756.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264431.4	RAPGEF2-001	6949	1499aa	ENSP00000264431.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43277	B4DG82 D6REY8 Q17RH5 Q4W5Q4 Q9UFT5 Q9Y4G8	NM_014247.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000505026.1	RAPGEF2-011	970	324aa	ENSP00000427334.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000505478.1	RAPGEF2-003	838	279aa	ENSP00000422707.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y905	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000510253.1	RAPGEF2-010	796	265aa	ENSP00000421083.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000512056.1	RAPGEF2-013	723	189aa	ENSP00000421624.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000514565.1	RAPGEF2-006	596	154aa	ENSP00000422361.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RC78	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000511336.1	RAPGEF2-007	582	116aa	ENSP00000421602.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6REY8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000510510.1	RAPGEF2-008	562	155aa	ENSP00000421740.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAK0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000502485.1	RAPGEF2-009	545	182aa	ENSP00000422098.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000504604.1	RAPGEF2-004	693	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000503328.1	RAPGEF2-005	433	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513816.1	RAPGEF2-002	3670	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000509891.1	RAPGEF2-012	537	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 537 bps,

Version

ENST00000509891.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000365021 (version 1)

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Transcript: ENST00000509891.1 RAPGEF2-012

Summary