Transcript: ENST00000514989.1 BST1-003

Description

bone marrow stromal cell antigen 1 [Source:HGNC Symbol;Acc:1118]

Gene Synonyms

CD157

Location

Chromosome 4: 15,716,951-15,739,936 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 9982 variant alleles and maps to 132 oligo probes.

Gene

This transcript is a product of gene ENSG00000109743.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265016.4	BST1-001	1480	318aa	ENSP00000265016.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3416	Q10588	NM_004334.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382346.3	BST1-002	1993	333aa	ENSP00000371783.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NC48	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000514445.1	BST1-005	1002	155aa	ENSP00000420925.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y8G4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000514989.1	BST1-003	801	97aa	ENSP00000424761.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000505785.1	BST1-004	770	186aa	ENSP00000423357.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 801 bps, Translation length: 97 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000514989.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs4320134, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HapMap-JPT.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000359348 (version 1)

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Recent locations

Transcript: ENST00000514989.1 BST1-003

Summary