Transcript: ENST00000505513.1 SEPSECS-005

Description

Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase [Source:HGNC Symbol;Acc:30605]

Gene Synonyms

LP, PCH2D, SLA, SLA/LP, TRNP48

Location

Chromosome 4: 25,128,886-25,156,853 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 10896 variant alleles and maps to 84 oligo probes.

Gene

This transcript is a product of gene ENSG00000109618.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000382103.2	SEPSECS-001	5496	501aa	ENSP00000371535.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3432	A1A4F3 Q9HD40	NM_016955.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000302922.3	SEPSECS-201	5490	422aa	ENSP00000305956.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9HD40	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513285.1	SEPSECS-004	561	177aa	ENSP00000423361.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R969	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000358971.3	SEPSECS-003	3344	112aa	ENSP00000351857.3	Nonsense mediated decay		J3KP25	-	-
ENST00000514585.1	SEPSECS-002	1494	47aa	ENSP00000421880.1	Nonsense mediated decay		Q9HD40	-	-
ENST00000503150.1	SEPSECS-006	544	95aa	ENSP00000423850.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000515272.1	SEPSECS-007	529	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505513.1	SEPSECS-005	420	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 420 bps,

Version

ENST00000505513.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000361134 (version 1)

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Transcript: ENST00000505513.1 SEPSECS-005

Summary