Transcript: ENST00000590299.1 HSD17B1-005

Description

hydroxysteroid (17-beta) dehydrogenase 1 [Source:HGNC Symbol;Acc:5210]

Gene Synonyms

E17KSR, EDH17B1, EDH17B2, EDHB17, HSD17, MGC138140, SDR28C1

Location

About this transcript

This transcript has 5 exons, is annotated with 9 domains and features, is associated with 1620 variant alleles and maps to 343 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000585807.1	HSD17B1-001	4982	328aa	ENSP00000466799.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11428	P14061	NM_000413.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000225929.5	HSD17B1-002	1265	329aa	ENSP00000225929.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590299.1	HSD17B1-005	1059	149aa	ENSP00000465128.1	Nonsense mediated decay		B4DU11	-	-
ENST00000593215.1	HSD17B1-003	1077	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587280.1	HSD17B1-004	1036	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,059 bps, Translation length: 149 residues

Version

ENST00000590299.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000450395 (version 1)