Transcript: ENST00000346213.4 RAB5C-001

Description

RAB5C, member RAS oncogene family [Source:HGNC Symbol;Acc:9785]

Gene Synonyms

L1880, RAB5CL, RAB5L, RABL

Location

Chromosome 17: 40,276,994-40,307,035 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 17 domains and features, is associated with 13535 variant alleles and maps to 388 oligo probes.

Gene

This transcript is a product of gene ENSG00000108774.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000547517.1	RAB5C-002	1167	249aa	ENSP00000447053.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58551	F8VSF8 F8VVK3 F8VWU4 K7EIP6 P51148	NM_001252039.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393860.3	RAB5C-201	1771	216aa	ENSP00000377440.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11419	F8VSF8 F8VVK3 F8VWU4 K7EIP6 P51148	NM_201434.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000346213.4	RAB5C-001	1671	216aa	ENSP00000345689.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11419	F8VSF8 F8VVK3 F8VWU4 K7EIP6 P51148	NM_004583.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550504.1	RAB5C-004	583	91aa	ENSP00000449777.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VSF8 F8VWU4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551338.1	RAB5C-006	560	150aa	ENSP00000467144.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ENY4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000552162.1	RAB5C-005	551	124aa	ENSP00000449612.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VSF8 F8VVK3 F8VWU4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000550406.1	RAB5C-008	500	74aa	ENSP00000448314.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VSF8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000546881.1	RAB5C-007	608	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000550013.1	RAB5C-003	555	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,671 bps, Translation length: 216 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P51148

CCDS

This transcript is a member of the Human CCDS set: CCDS11419

Version

ENST00000346213.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000405509 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000346213.4 RAB5C-001

Summary