Transcript: ENST00000323456.5 MTMR4-001

Description

myotubularin related protein 4 [Source:HGNC Symbol;Acc:7452]

Gene Synonyms

FYVE-DSP2, KIAA0647, ZFYVE11

Location

Chromosome 17: 56,566,898-56,595,266 reverse strand.

About this transcript

This transcript has 19 exons, is annotated with 18 domains and features, is associated with 11287 variant alleles and maps to 682 oligo probes.

Gene

This transcript is a product of gene ENSG00000108389.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000323456.5	MTMR4-001	5839	1195aa	ENSP00000325285.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11608	J3QRJ2 Q9NYA4	NM_004687.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579925.1	MTMR4-003	5614	1138aa	ENSP00000464067.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QR65 J3QRJ2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000583656.1	MTMR4-004	810	197aa	ENSP00000463479.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT95 J3QLB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000579921.1	MTMR4-005	425	95aa	ENSP00000463259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QKV8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000583243.1	MTMR4-006	317	16aa	ENSP00000464588.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000582390.1	MTMR4-002	1281	112aa	ENSP00000462869.1	Nonsense mediated decay		J3KT95	-	-
ENST00000582663.1	MTMR4-007	572	98aa	ENSP00000464247.1	Nonsense mediated decay		J3QRJ2	-	-
ENST00000580983.1	MTMR4-008	631	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000578259.1	MTMR4-010	588	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000583966.1	MTMR4-009	439	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 18, Transcript length: 5,839 bps, Translation length: 1,195 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NYA4

CCDS

This transcript is a member of the Human CCDS set: CCDS11608

Version

ENST00000323456.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000444721 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000323456.5 MTMR4-001

Summary