Transcript: ENST00000494691.1 KRT23-003

Description

keratin 23 (histone deacetylase inducible) [Source:HGNC Symbol;Acc:6438]

Gene Synonyms

CK23, DKFZP434G032, HAIK1, K23, MGC26158

Location

Chromosome 17: 39,084,490-39,093,797 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 4212 variant alleles and maps to 140 oligo probes.

Gene

This transcript is a product of gene ENSG00000108244.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000209718.3	KRT23-001	1987	422aa	ENSP00000209718.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11380	I3L3Q6 K7EPI0 Q9C075	NM_015515.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436344.3	KRT23-005	1485	285aa	ENSP00000414056.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62182	I3L3Q6	NM_001282433.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000485751.1	KRT23-004	865	52aa	ENSP00000467393.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EPI0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584517.1	KRT23-010	687	149aa	ENSP00000464051.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QR55	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000462312.1	KRT23-002	1462	37aa	ENSP00000462335.1	Nonsense mediated decay		Q9UFN7	-	-
ENST00000494691.1	KRT23-003	700	37aa	ENSP00000464548.1	Nonsense mediated decay		Q9UFN7	-	-
ENST00000582283.1	KRT23-008	576	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000585006.1	KRT23-009	569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000582754.1	KRT23-006	1567	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 700 bps, Translation length: 37 residues

Version

ENST00000494691.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000257225 (version 2)

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Transcript: ENST00000494691.1 KRT23-003

Summary