Transcript: ENST00000521713.1 USP42-009

Description

ubiquitin specific peptidase 42 [Source:HGNC Symbol;Acc:20068]

Gene Synonyms

FLJ12697

Location

Chromosome 7: 6,144,653-6,200,262 forward strand.

About this transcript

This transcript has 17 exons, is annotated with 7 domains and features, is associated with 33064 variant alleles and maps to 758 oligo probes.

Gene

This transcript is a product of gene ENSG00000106346.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000306177.5	USP42-005	5155	1316aa	ENSP00000301962.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47535	C9JPC9 E5RJP3 Q9H9J4	NM_032172.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000426246.2	USP42-006	3611	1043aa	ENSP00000408217.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JPC9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000465073.2	USP42-008	1490	475aa	ENSP00000430568.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EWZ4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521713.1	USP42-009	5017	219aa	ENSP00000431127.1	Nonsense mediated decay		E5RJP3	-	-
ENST00000404008.2	USP42-004	1380	174aa	ENSP00000385964.2	Nonsense mediated decay		B4DP25	-	-
ENST00000451154.1	USP42-003	520	98aa	ENSP00000416910.1	Nonsense mediated decay		F8WD92	-	-
ENST00000479544.2	USP42-007	4286	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 4, Transcript length: 5,017 bps, Translation length: 219 residues

Version

ENST00000521713.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000375775 (version 1)

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Transcript: ENST00000521713.1 USP42-009

Summary