Transcript: ENST00000592131.1 ATP4A-002

Description

ATPase, H+/K+ exchanging, alpha polypeptide [Source:HGNC Symbol;Acc:819]

Gene Synonyms

ATP6A

Location

About this transcript

This transcript has 10 exons, is associated with 3603 variant alleles and maps to 374 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262623.3	ATP4A-001	3709	1035aa	ENSP00000262623.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12467	P20648	NM_000704.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000592767.2	ATP4A-004	650	34aa	ENSP00000472323.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000592131.1	ATP4A-002	1912	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590916.1	ATP4A-003	449	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 1,912 bps,

Version

ENST00000592131.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000460770 (version 1)