Transcript: ENST00000412770.2 PPP6R1-001

Description

protein phosphatase 6, regulatory subunit 1 [Source:HGNC Symbol;Acc:29195]

Gene Synonyms

KIAA1115, PP6R1, SAP190, SAPS1

Location

Chromosome 19: 55,741,148-55,770,363 reverse strand.

About this transcript

This transcript has 24 exons, is annotated with 16 domains and features, is associated with 16617 variant alleles and maps to 680 oligo probes.

Gene

This transcript is a product of gene ENSG00000105063.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000412770.2	PPP6R1-001	3961	881aa	ENSP00000414202.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46186	K7EM28 Q96ID3 Q9UPN7	NM_014931.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587283.1	PPP6R1-002	2953	881aa	ENSP00000467521.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46186	K7EM28 Q96ID3 Q9UPN7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000592242.1	PPP6R1-007	574	157aa	ENSP00000466332.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EM28	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000587457.1	PPP6R1-008	2389	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589343.1	PPP6R1-005	904	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000591323.1	PPP6R1-004	848	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586690.1	PPP6R1-006	668	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000591602.1	PPP6R1-003	520	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 24, Coding exons: 23, Transcript length: 3,961 bps, Translation length: 881 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UPN7

CCDS

This transcript is a member of the Human CCDS set: CCDS46186

Version

ENST00000412770.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000452663 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000412770.2 PPP6R1-001

Summary