Transcript: ENST00000319670.9 ARHGEF18-002

Description

Rho/Rac guanine nucleotide exchange factor (GEF) 18 [Source:HGNC Symbol;Acc:17090]

Gene Synonyms

KIAA0521, MGC15913, P114-RhoGEF

Location

Chromosome 19: 7,459,999-7,537,363 forward strand.

About this transcript

This transcript has 21 exons, is annotated with 23 domains and features, is associated with 37774 variant alleles and maps to 660 oligo probes.

Gene

This transcript is a product of gene ENSG00000104880.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000359920.6	ARHGEF18-001	5733	1173aa	ENSP00000352995.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45946	M0R125 Q6ZSZ5	NM_001130955.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000319670.9	ARHGEF18-002	5212	1015aa	ENSP00000319200.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12177	M0R125 Q6ZSZ5	NM_015318.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000594665.1	ARHGEF18-003	4616	812aa	ENSP00000470729.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000599752.1	ARHGEF18-006	582	86aa	ENSP00000471597.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R125	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000595600.1	ARHGEF18-005	560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 19, Transcript length: 5,212 bps, Translation length: 1,015 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6ZSZ5

CCDS

This transcript is a member of the Human CCDS set: CCDS12177

Version

ENST00000319670.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000436339 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000319670.9 ARHGEF18-002

Summary