Transcript: ENST00000219334.5 SMPD3-001

Description

sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II) [Source:HGNC Symbol;Acc:14240]

Gene Synonyms

NSMASE2

Location

Chromosome 16: 68,392,231-68,482,591 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 12 domains and features, is associated with 38496 variant alleles and maps to 457 oligo probes.

Gene

This transcript is a product of gene ENSG00000103056.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000219334.5	SMPD3-001	5450	655aa	ENSP00000219334.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10867	C8CHW6 D6Q0F1 H3BTM0 Q9NY59	NM_018667.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000563226.1	SMPD3-002	2093	647aa	ENSP00000455955.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZL82 C8CHW6 H3BTM0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000568373.1	SMPD3-003	2073	638aa	ENSP00000457422.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C8CHW6 D6Q0F1 H3BS51 H3BTM0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000574662.1	SMPD3-014	1755	207aa	ENSP00000459317.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561749.1	SMPD3-012	627	93aa	ENSP00000457236.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BTM0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000566009.1	SMPD3-010	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000566466.1	SMPD3-007	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000563455.1	SMPD3-008	546	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000566723.1	SMPD3-006	524	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000563396.1	SMPD3-011	608	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567811.1	SMPD3-009	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567223.2	SMPD3-013	530	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 5,450 bps, Translation length: 655 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NY59

CCDS

This transcript is a member of the Human CCDS set: CCDS10867

Version

ENST00000219334.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000268895 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000219334.5 SMPD3-001

Summary