Transcript: ENST00000462786.1 SUV39H1-003

Description

suppressor of variegation 3-9 homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:11479]

Gene Synonyms

H3-K9-HMTase 1, KMT1A, MG44, SUV39H

Location

Chromosome X: 48,564,694-48,566,248 forward strand.

About this transcript

This transcript has 2 exons, is associated with 551 variant alleles and maps to 241 oligo probes.

Gene

This transcript is a product of gene ENSG00000101945.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376687.3	SUV39H1-001	2871	412aa	ENSP00000365877.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14304	O43463	NM_003173.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000337852.6	SUV39H1-201	1773	423aa	ENSP00000337976.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS65252	B4DST0	NM_001282166.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453214.2	SUV39H1-202	1730	184aa	ENSP00000410686.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DP90	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000482260.1	SUV39H1-002	778	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462786.1	SUV39H1-003	746	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 746 bps,

Version

ENST00000462786.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000318355 (version 1)

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Transcript: ENST00000462786.1 SUV39H1-003

Summary