Transcript: ENST00000371242.2 RAE1-002

Description

ribonucleic acid export 1 [Source:HGNC Symbol;Acc:9828]

Gene Synonyms

MIG14, MRNP41, Mnrp41, dJ481F12.3, dJ800J21.1

Location

Chromosome 20: 55,926,279-55,954,267 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 22 domains and features, is associated with 13276 variant alleles and maps to 566 oligo probes.

Gene

This transcript is a product of gene ENSG00000101146.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000395841.2	RAE1-001	2639	368aa	ENSP00000379182.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13458	B0QZ36 B0QZ37 P78406	NM_003610.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395840.2	RAE1-003	2602	368aa	ENSP00000379181.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13458	B0QZ36 B0QZ37 P78406	NM_001015885.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371242.2	RAE1-002	2362	368aa	ENSP00000360286.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13458	B0QZ36 B0QZ37 P78406	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527947.1	RAE1-010	1503	437aa	ENSP00000432609.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QZ36 B0QZ37 E9PQ57	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452119.1	RAE1-005	691	87aa	ENSP00000402924.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QZ37	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000411894.1	RAE1-006	588	137aa	ENSP00000392097.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QZ36 B0QZ37	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000429339.1	RAE1-007	480	137aa	ENSP00000393264.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QZ36 B0QZ37	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000492498.1	RAE1-008	1156	217aa	ENSP00000432698.1	Nonsense mediated decay		B0QZ36 B0QZ37 E9PPG9	-	-
ENST00000462438.1	RAE1-004	3251	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 2,362 bps, Translation length: 368 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P78406

CCDS

This transcript is a member of the Human CCDS set: CCDS13458

Version

ENST00000371242.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000259499 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000371242.2 RAE1-002

Summary