Transcript: ENST00000216639.3 VRK1-001

Description

vaccinia related kinase 1 [Source:HGNC Symbol;Acc:12718]

Gene Synonyms

PCH1, PCH1A

Location

Chromosome 14: 97,263,641-97,347,950 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 11 domains and features, is associated with 34537 variant alleles and maps to 470 oligo probes.

Gene

This transcript is a product of gene ENSG00000100749.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216639.3	VRK1-001	1745	396aa	ENSP00000216639.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9947	Q99986	NM_003384.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557222.1	VRK1-003	1029	232aa	ENSP00000450820.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000557352.1	VRK1-006	599	176aa	ENSP00000451682.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000553683.1	VRK1-005	247	65aa	ENSP00000451412.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000555067.1	VRK1-004	604	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000555402.1	VRK1-007	415	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000555351.1	VRK1-002	667	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 1,745 bps, Translation length: 396 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99986

CCDS

This transcript is a member of the Human CCDS set: CCDS9947

Version

ENST00000216639.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000413520 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000216639.3 VRK1-001

Summary