Transcript: ENST00000480048.1 ST13-005

Description

suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343]

Gene Synonyms

AAG2, FAM10A1, FAM10A4, HIP, HOP, HSPABP, HSPABP1, P48, PRO0786, SNC6

Location

Chromosome 22: 41,223,154-41,231,909 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 4084 variant alleles and maps to 259 oligo probes.

Gene

This transcript is a product of gene ENSG00000100380.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216218.3	ST13-001	3595	369aa	ENSP00000216218.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14006	B4E0U6 B7ZA40 F6VDH7 P50502 Q0IJ56	NM_003932.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411695.1	ST13-003	549	162aa	ENSP00000392067.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6VDH7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000455824.1	ST13-002	798	38aa	ENSP00000397062.1	Nonsense mediated decay		F8WAQ7	-	-
ENST00000413424.1	ST13-004	630	146aa	ENSP00000412049.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000480048.1	ST13-005	592	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495652.1	ST13-006	425	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 592 bps,

Version

ENST00000480048.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000321763 (version 1)

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Transcript: ENST00000480048.1 ST13-005

Summary