Transcript: ENST00000455790.1 PDGFB-003

Description

platelet-derived growth factor beta polypeptide [Source:HGNC Symbol;Acc:8800]

Gene Synonyms

IBGC5, PDGF-2, PDGF2, SIS, SSV, c-sis

Location

About this transcript

This transcript has 5 exons, is annotated with 9 domains and features, is associated with 6225 variant alleles and maps to 158 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000331163.6	PDGFB-001	3497	241aa	ENSP00000330382.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13987	A9UJN9 A9UJP0 P01127 P78450 Q9UE56 Q9UE57	NM_002608.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381551.4	PDGFB-002	1125	226aa	ENSP00000370963.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33650	A9UJN9 A9UJP0 P01127 Q9UE56 Q9UE57	NM_033016.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440375.1	PDGFB-004	556	136aa	ENSP00000405780.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A9UJN9 Q9UE57	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000455790.1	PDGFB-003	554	144aa	ENSP00000402306.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A9UJN9 A9UJP0 Q9UE57	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 554 bps, Translation length: 144 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000455790.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000321045 (version 2)