Transcript: ENST00000339754.5 NECAP1-001

Description

NECAP endocytosis associated 1 [Source:HGNC Symbol;Acc:24539]

Gene Synonyms

DKFZP566B183

Location

Chromosome 12: 8,234,807-8,250,367 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 8 domains and features, is associated with 7022 variant alleles and maps to 481 oligo probes.

Gene

This transcript is a product of gene ENSG00000089818.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000339754.5	NECAP1-001	2587	275aa	ENSP00000341737.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8589	A8K3C2 F5H2U7 Q8NC96	NM_015509.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540083.1	NECAP1-010	863	116aa	ENSP00000439319.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H2U7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000450991.2	NECAP1-003	2446	102aa	ENSP00000401963.2	Nonsense mediated decay		Q8NC96	-	-
ENST00000541948.1	NECAP1-009	582	110aa	ENSP00000440658.1	Nonsense mediated decay		F5GYH1	-	-
ENST00000537796.1	NECAP1-004	3129	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000545807.1	NECAP1-007	658	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000544891.1	NECAP1-008	627	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000546181.1	NECAP1-005	621	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000542095.1	NECAP1-006	551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 2,587 bps, Translation length: 275 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NC96

CCDS

This transcript is a member of the Human CCDS set: CCDS8589

Version

ENST00000339754.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000400244 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000339754.5 NECAP1-001

Summary