Transcript: ENST00000590032.1 SEH1L-010

Description

SEH1-like (S. cerevisiae) [Source:HGNC Symbol;Acc:30379]

Gene Synonyms

SEC13L, SEH1, SEH1A, SEH1B, Seh1

Location

Chromosome 18: 12,978,828-12,983,216 forward strand.

About this transcript

This transcript has 2 exons, is associated with 3305 variant alleles and maps to 80 oligo probes.

Gene

This transcript is a product of gene ENSG00000085415.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399892.2	SEH1L-002	1846	421aa	ENSP00000382779.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32791	K7EPZ5 Q96EE3	NM_001013437.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000262124.11	SEH1L-001	3494	360aa	ENSP00000262124.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45832	K7EPZ5 Q96EE3	NM_031216.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587761.1	SEH1L-008	863	263aa	ENSP00000466234.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ELV2 K7EPZ5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000592170.1	SEH1L-005	787	77aa	ENSP00000467605.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EPZ5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000589446.1	SEH1L-006	655	189aa	ENSP00000467276.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EP88	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000585730.1	SEH1L-007	582	158aa	ENSP00000466959.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ENI5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000592582.1	SEH1L-003	4072	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588251.1	SEH1L-009	789	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000590843.1	SEH1L-004	5206	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590032.1	SEH1L-010	764	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 764 bps,

Version

ENST00000590032.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000458262 (version 1)

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Transcript: ENST00000590032.1 SEH1L-010

Summary