Transcript: ENST00000262124.11 SEH1L-001

Description

SEH1-like (S. cerevisiae) [Source:HGNC Symbol;Acc:30379]

Gene Synonyms

SEC13L, SEH1, SEH1A, SEH1B, Seh1

Location

Chromosome 18: 12,947,994-12,987,535 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 23 domains and features, is associated with 19066 variant alleles and maps to 506 oligo probes.

Gene

This transcript is a product of gene ENSG00000085415.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399892.2	SEH1L-002	1846	421aa	ENSP00000382779.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32791	K7EPZ5 Q96EE3	NM_001013437.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000262124.11	SEH1L-001	3494	360aa	ENSP00000262124.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45832	K7EPZ5 Q96EE3	NM_031216.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587761.1	SEH1L-008	863	263aa	ENSP00000466234.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ELV2 K7EPZ5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000592170.1	SEH1L-005	787	77aa	ENSP00000467605.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EPZ5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000589446.1	SEH1L-006	655	189aa	ENSP00000467276.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EP88	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000585730.1	SEH1L-007	582	158aa	ENSP00000466959.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ENI5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000592582.1	SEH1L-003	4072	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588251.1	SEH1L-009	789	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000590843.1	SEH1L-004	5206	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590032.1	SEH1L-010	764	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 3,494 bps, Translation length: 360 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96EE3

CCDS

This transcript is a member of the Human CCDS set: CCDS45832

Version

ENST00000262124.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000458254 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000262124.11 SEH1L-001

Summary