Transcript: ENST00000544080.2 HAL-003

Description

histidine ammonia-lyase [Source:HGNC Symbol;Acc:4806]

Gene Synonyms

HIS, HSTD

Location

Chromosome 12: 96,367,408-96,390,069 reverse strand.

About this transcript

This transcript has 20 exons, is annotated with 5 domains and features, is associated with 9804 variant alleles and maps to 672 oligo probes.

Gene

This transcript is a product of gene ENSG00000084110.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261208.3	HAL-001	3913	657aa	ENSP00000261208.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9058	P42357 Q2PH56 Q2PH60 Q2PH61	NM_002108.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541929.1	HAL-201	2804	449aa	ENSP00000446364.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58264	P42357 Q2PH56	NM_001258333.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538703.1	HAL-002	2637	591aa	ENSP00000440861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58265	P42357 Q2PH56 Q2PH60 Q2PH61	NM_001258334.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552509.1	HAL-006	1026	336aa	ENSP00000450372.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VNX0 Q2PH56 Q2PH60	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000548808.1	HAL-009	753	154aa	ENSP00000446678.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000546579.1	HAL-010	697	157aa	ENSP00000447543.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W0V1 Q2PH60 Q2PH61	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000544080.2	HAL-003	2804	167aa	ENSP00000439385.2	Nonsense mediated decay		Q4VB95	-	-
ENST00000546999.1	HAL-005	2271	167aa	ENSP00000447675.1	Nonsense mediated decay		Q4VB95	-	-
ENST00000551562.1	HAL-008	450	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548636.1	HAL-011	370	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000549376.1	HAL-007	352	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 6, Transcript length: 2,804 bps, Translation length: 167 residues

Version

ENST00000544080.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000408645 (version 1)

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Transcript: ENST00000544080.2 HAL-003

Summary