Transcript: ENST00000554401.1 HSP90AA1-003

Description

heat shock protein 90kDa alpha (cytosolic), class A member 1 [Source:HGNC Symbol;Acc:5253]

Gene Synonyms

EL52, FLJ31884, HSP86, HSP89A, HSP90A, HSP90N, HSPC1, HSPCA, HSPCAL1, HSPCAL4, HSPN, Hsp89, Hsp90, LAP2

Location

Chromosome 14: 102,549,002-102,552,668 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 6 domains and features, is associated with 3313 variant alleles and maps to 583 oligo probes.

Gene

This transcript is a product of gene ENSG00000080824.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000334701.7	HSP90AA1-001	3510	854aa	ENSP00000335153.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32160	K9JA46 P07900 Q86SX1 Q8TBA7 Q96HX7	NM_001017963.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000216281.8	HSP90AA1-002	3379	732aa	ENSP00000216281.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9967	K9JA46 P07900 Q8TBA7 Q96HX7	NM_005348.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441629.2	HSP90AA1-201	1710	413aa	ENSP00000396189.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q86U12	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553585.1	HSP90AA1-005	581	174aa	ENSP00000450712.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2J8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554401.1	HSP90AA1-003	1710	52aa	ENSP00000451400.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000557234.1	HSP90AA1-008	584	80aa	ENSP00000452241.1	Nonsense mediated decay		G3V592	-	-
ENST00000558600.1	HSP90AA1-010	595	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000557089.1	HSP90AA1-007	694	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556554.1	HSP90AA1-004	552	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000560130.1	HSP90AA1-009	488	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000555662.1	HSP90AA1-006	429	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 2, Transcript length: 1,710 bps, Translation length: 52 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000554401.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000414954 (version 1)

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Transcript: ENST00000554401.1 HSP90AA1-003

Summary