Transcript: ENST00000449320.1 SYNJ2-005

Description

synaptojanin 2 [Source:HGNC Symbol;Acc:11504]

Gene Synonyms

INPP5H, KIAA0348

Location

Chromosome 6: 158,438,497-158,450,003 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 1 domain and feature, is associated with 5084 variant alleles and maps to 155 oligo probes.

Gene

This transcript is a product of gene ENSG00000078269.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355585.4	SYNJ2-002	7378	1496aa	ENSP00000347792.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5254	B4DLC4 O15056	NM_003898.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367122.2	SYNJ2-202	7271	1451aa	ENSP00000356089.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ER60	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367112.1	SYNJ2-003	5091	581aa	ENSP00000356079.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367121.3	SYNJ2-201	3973	1288aa	ENSP00000356088.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O15056	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449859.2	SYNJ2-203	2060	516aa	ENSP00000388371.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJU8 Q5TA15	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449320.1	SYNJ2-005	547	92aa	ENSP00000411202.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TA15	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000367113.4	SYNJ2-004	499	136aa	ENSP00000356080.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000485863.1	SYNJ2-001	810	165aa	ENSP00000436657.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 547 bps, Translation length: 92 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000449320.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000042861 (version 1)

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Transcript: ENST00000449320.1 SYNJ2-005

Summary