Transcript: ENST00000487697.1 LRCH4-009

Description

leucine-rich repeats and calponin homology (CH) domain containing 4 [Source:HGNC Symbol;Acc:6691]

Gene Synonyms

LRN, LRRN1, LRRN4, PP14183

Location

Chromosome 7: 100,175,469-100,176,362 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 503 variant alleles and maps to 276 oligo probes.

Gene

This transcript is a product of gene ENSG00000077454.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000310300.6	LRCH4-001	2552	683aa	ENSP00000309689.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34706	C9JYK0 O75427	NM_002319.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000497245.1	LRCH4-002	2014	231aa	ENSP00000419870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYK0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000485554.1	LRCH4-012	774	177aa	ENSP00000419674.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000467201.1	LRCH4-003	4754	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485071.1	LRCH4-004	4401	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476881.1	LRCH4-005	1675	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000498539.1	LRCH4-010	819	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487697.1	LRCH4-009	756	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470184.1	LRCH4-008	659	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485583.1	LRCH4-007	571	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490359.1	LRCH4-011	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 756 bps,

Version

ENST00000487697.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000356118 (version 1)

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Transcript: ENST00000487697.1 LRCH4-009

Summary