Transcript: ENST00000467116.1 NFKB2-002

Description

nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) [Source:HGNC Symbol;Acc:7795]

Gene Synonyms

CVID10, H2TF1, LYT-10, LYT10, NF-kB2, p105, p52

Location

Chromosome 10: 104,155,463-104,158,975 forward strand.

About this transcript

This transcript has 12 exons, is associated with 1777 variant alleles and maps to 424 oligo probes.

Gene

This transcript is a product of gene ENSG00000077150.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000369966.3	NFKB2-003	3101	900aa	ENSP00000358983.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41564	M0QZX1 M0R119 Q00653	NM_001077494.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428099.1	NFKB2-201	3048	899aa	ENSP00000410256.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41565	M0QZX1 M0R119 Q00653	NM_001288724.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000189444.6	NFKB2-001	3011	899aa	ENSP00000189444.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41565	M0QZX1 M0R119 Q00653	NM_002502.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000601386.1	NFKB2-007	585	22aa	ENSP00000470826.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QZX1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000471698.1	NFKB2-004	472	68aa	ENSP00000471586.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QZX1 M0R119	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000336486.5	NFKB2-008	851	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000593908.1	NFKB2-006	562	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467116.1	NFKB2-002	1634	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473400.1	NFKB2-005	570	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 0, Transcript length: 1,634 bps,

Version

ENST00000467116.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000050079 (version 1)

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Transcript: ENST00000467116.1 NFKB2-002

Summary