Transcript: ENST00000513104.1 TRPC7-001

Description

transient receptor potential cation channel, subfamily C, member 7 [Source:HGNC Symbol;Acc:20754]

Gene Synonyms

TRP7

Location

Chromosome 5: 135,549,008-135,701,225 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 28 domains and features, is associated with 63383 variant alleles and maps to 478 oligo probes.

Gene

This transcript is a product of gene ENSG00000069018.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000513104.1	TRPC7-001	2987	862aa	ENSP00000426070.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47267	Q9HCX4	NM_020389.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355180.3	TRPC7-201	2752	801aa	ENSP00000347312.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54906	Q9HCX4	NM_001167577.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000426057.2	TRPC7-202	2587	746aa	ENSP00000441628.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54905	Q9HCX4	NM_001167576.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000502753.2	TRPC7-006	2422	807aa	ENSP00000424854.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000378459.2	TRPC7-005	2404	801aa	ENSP00000367720.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000352189.3	TRPC7-003	2239	746aa	ENSP00000330322.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000503275.1	TRPC7-002	2603	380aa	ENSP00000421571.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000514963.1	TRPC7-004	2022	261aa	ENSP00000426870.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000514282.1	TRPC7-008	414	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509288.1	TRPC7-007	817	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 2,987 bps, Translation length: 862 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9HCX4

CCDS

This transcript is a member of the Human CCDS set: CCDS47267

Version

ENST00000513104.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000366975 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000513104.1 TRPC7-001

Summary