Transcript: ENST00000481163.1 PRDM1-003

Description

PR domain containing 1, with ZNF domain [Source:HGNC Symbol;Acc:9346]

Gene Synonyms

BLIMP1, PRDI-BF1

Location

Chromosome 6: 106,546,800-106,547,584 forward strand.

About this transcript

This transcript has 2 exons, is associated with 576 variant alleles and maps to 81 oligo probes.

Gene

This transcript is a product of gene ENSG00000057657.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000369096.4	PRDM1-001	5164	825aa	ENSP00000358092.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5054	B2REA5 O75626 Q5T4E8	NM_001198.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369089.3	PRDM1-002	4675	691aa	ENSP00000358085.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34505	B4DW27 O75626	NM_182907.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369091.2	PRDM1-004	2612	789aa	ENSP00000358087.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B2REA5 O75626 Q5T4E8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424894.1	PRDM1-006	583	63aa	ENSP00000395566.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B2REA5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000450060.1	PRDM1-007	583	171aa	ENSP00000399772.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B2REA4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000489365.1	PRDM1-005	649	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481163.1	PRDM1-003	580	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 580 bps,

Version

ENST00000481163.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000041663 (version 2)

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Transcript: ENST00000481163.1 PRDM1-003

Summary