Transcript: ENST00000488403.1 NOP58-002

Description

NOP58 ribonucleoprotein [Source:HGNC Symbol;Acc:29926]

Gene Synonyms

HSPC120, NOL5, NOP5, NOP5/NOP58

Location

Chromosome 2: 203,130,459-203,149,435 forward strand.

About this transcript

This transcript has 5 exons, is associated with 9227 variant alleles and maps to 175 oligo probes.

Gene

This transcript is a product of gene ENSG00000055044.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264279.5	NOP58-001	2046	529aa	ENSP00000264279.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2353	Q9Y2X3	NM_015934.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433543.2	NOP58-008	714	187aa	ENSP00000388126.1	Nonsense mediated decay		H7BZ72	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000426814.1	NOP58-006	655	68aa	ENSP00000388905.1	Nonsense mediated decay		F8WED0	-	-
ENST00000467734.1	NOP58-007	638	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478508.1	NOP58-010	599	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472050.1	NOP58-003	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492688.1	NOP58-005	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488403.1	NOP58-002	871	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492740.1	NOP58-009	793	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478941.1	NOP58-004	508	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 871 bps,

Version

ENST00000488403.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000336294 (version 1)

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Transcript: ENST00000488403.1 NOP58-002

Summary