Transcript: ENST00000470597.1 ADAMTS6-003

Description

ADAM metallopeptidase with thrombospondin type 1 motif, 6 [Source:HGNC Symbol;Acc:222]

Gene Synonyms

ADAM-TS 6, ADAM-TS6, ADAMTS-6

Location

Chromosome 5: 64,510,225-64,769,521 reverse strand.

About this transcript

This transcript has 18 exons, is associated with 105917 variant alleles and maps to 519 oligo probes.

Gene

This transcript is a product of gene ENSG00000049192.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381055.3	ADAMTS6-007	7311	1117aa	ENSP00000370443.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3983	Q5IR90 Q9UKP5	NM_197941.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENST00000464680.2	ADAMTS6-009	2742	908aa	ENSP00000423551.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R9L6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000536360.1	ADAMTS6-201	2221	468aa	ENSP00000440995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UKP5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381052.4	ADAMTS6-008	6956	292aa	ENSP00000424377.1	Nonsense mediated decay		Q9UKP5	-	-
ENST00000314351.5	ADAMTS6-006	1322	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000417396.2	ADAMTS6-012	550	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000504282.1	ADAMTS6-011	350	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470597.1	ADAMTS6-003	2850	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000502886.1	ADAMTS6-010	1237	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 0, Transcript length: 2,850 bps,

Version

ENST00000470597.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000157331 (version 4)

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Transcript: ENST00000470597.1 ADAMTS6-003

Summary