Transcript: ENST00000478896.2 VCL-003

Description

vinculin [Source:HGNC Symbol;Acc:12665]

Gene Synonyms

CMD1W, CMH15, HEL114, MV, MVCL

Location

Chromosome 10: 75,757,874-75,865,051 forward strand.

About this transcript

This transcript has 5 exons, is associated with 41564 variant alleles and maps to 106 oligo probes.

Gene

This transcript is a product of gene ENSG00000035403.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000211998.4	VCL-201	5482	1134aa	ENSP00000211998.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7341	P18206 Q5JQ13	NM_014000.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372755.3	VCL-001	5286	1066aa	ENSP00000361841.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7340	P18206	NM_003373.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436396.1	VCL-002	4412	806aa	ENSP00000415489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JQ13	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000417648.2	VCL-202	1386	327aa	ENSP00000411887.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DTM7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000478896.2	VCL-003	727	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472585.1	VCL-004	556	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461383.1	VCL-005	268	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 727 bps,

Version

ENST00000478896.2

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000048753 (version 2)

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Transcript: ENST00000478896.2 VCL-003

Summary