Transcript: ENST00000469543.1 VIM-003

Description

vimentin [Source:HGNC Symbol;Acc:12692]

Gene Synonyms

CTRCT30, HEL113

Location

Chromosome 10: 17,272,003-17,279,592 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 9 domains and features, is associated with 3799 variant alleles and maps to 529 oligo probes.

Gene

This transcript is a product of gene ENSG00000026025.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000544301.1	VIM-201	2128	466aa	ENSP00000446007.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7120	P08670	NM_003380.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000224237.5	VIM-001	1868	466aa	ENSP00000224237.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7120	P08670	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421459.2	VIM-008	753	173aa	ENSP00000391842.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JVS8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000469543.1	VIM-003	2666	228aa	ENSP00000431702.1	Nonsense mediated decay		B0YJC5	-	-
ENST00000487938.1	VIM-002	2272	431aa	ENSP00000435613.1	Nonsense mediated decay		B0YJC4	-	-
ENST00000485947.1	VIM-007	1139	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495528.1	VIM-009	962	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478317.1	VIM-004	941	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478746.1	VIM-005	757	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497849.1	VIM-006	634	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,666 bps, Translation length: 228 residues

Version

ENST00000469543.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000047017 (version 3)

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Transcript: ENST00000469543.1 VIM-003

Summary