Transcript: ENST00000582832.1 UTP18-009

Description

UTP18 small subunit (SSU) processome component homolog (yeast) [Source:HGNC Symbol;Acc:24274]

Gene Synonyms

CGI-48, WDR50

Location

Chromosome 17: 49,362,629-49,375,291 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 5669 variant alleles and maps to 142 oligo probes.

Gene

This transcript is a product of gene ENSG00000011260.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000225298.7	UTP18-001	1894	556aa	ENSP00000225298.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42362	Q9Y5J1	NM_016001.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000583725.1	UTP18-005	577	177aa	ENSP00000462614.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSR7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000579261.2	UTP18-008	567	123aa	ENSP00000464194.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000582832.1	UTP18-009	464	115aa	ENSP00000463499.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QLD6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000583205.1	UTP18-007	664	143aa	ENSP00000464095.1	Nonsense mediated decay		J3QR85	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000508506.3	UTP18-004	592	43aa	ENSP00000441335.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000582150.1	UTP18-006	897	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 464 bps, Translation length: 115 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000582832.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000368674 (version 1)

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Transcript: ENST00000582832.1 UTP18-009

Summary