Transcript: ENST00000443937.3 LASP1-005

Description

LIM and SH3 protein 1 [Source:HGNC Symbol;Acc:6513]

Gene Synonyms

Lasp-1, MLN50

Location

Chromosome 17: 37,026,314-37,075,428 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 8 domains and features, is associated with 21618 variant alleles and maps to 278 oligo probes.

Gene

This transcript is a product of gene ENSG00000002834.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000318008.6	LASP1-001	4109	261aa	ENSP00000325240.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11331	C9J9W2 Q14847	NM_006148.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435347.3	LASP1-202	3492	261aa	ENSP00000392853.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11331	C9J9W2 Q14847	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579123.1	LASP1-008	1874	105aa	ENSP00000462564.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSN1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000433206.2	LASP1-201	1408	205aa	ENSP00000401048.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62164	B4DGQ0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000419929.1	LASP1-002	762	166aa	ENSP00000391897.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J9W2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000443937.3	LASP1-005	1482	91aa	ENSP00000414803.3	Nonsense mediated decay		F6S2S5	-	-
ENST00000585841.1	LASP1-003	1408	71aa	ENSP00000468664.1	Nonsense mediated decay		K7ESD6	-	-
ENST00000584106.1	LASP1-004	1167	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000581485.1	LASP1-009	617	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 4, Transcript length: 1,482 bps, Translation length: 91 residues

Version

ENST00000443937.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000442006 (version 1)

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Transcript: ENST00000443937.3 LASP1-005

Summary