Transcript: ENST00000318008.6 LASP1-001

Description

LIM and SH3 protein 1 [Source:HGNC Symbol;Acc:6513]

Gene Synonyms

Lasp-1, MLN50

Location

Chromosome 17: 37,026,112-37,078,023 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 24 domains and features, is associated with 22882 variant alleles and maps to 516 oligo probes.

Gene

This transcript is a product of gene ENSG00000002834.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000318008.6	LASP1-001	4109	261aa	ENSP00000325240.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11331	C9J9W2 Q14847	NM_006148.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435347.3	LASP1-202	3492	261aa	ENSP00000392853.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11331	C9J9W2 Q14847	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579123.1	LASP1-008	1874	105aa	ENSP00000462564.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSN1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000433206.2	LASP1-201	1408	205aa	ENSP00000401048.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62164	B4DGQ0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000419929.1	LASP1-002	762	166aa	ENSP00000391897.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J9W2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000443937.3	LASP1-005	1482	91aa	ENSP00000414803.3	Nonsense mediated decay		F6S2S5	-	-
ENST00000585841.1	LASP1-003	1408	71aa	ENSP00000468664.1	Nonsense mediated decay		K7ESD6	-	-
ENST00000584106.1	LASP1-004	1167	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000581485.1	LASP1-009	617	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 4,109 bps, Translation length: 261 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14847

CCDS

This transcript is a member of the Human CCDS set: CCDS11331

Version

ENST00000318008.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256890 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000318008.6 LASP1-001

Summary