Description
sequestosome 1 [Source:HGNC Symbol;Acc:11280]
Gene Synonyms
A170, ORCA, OSIL, PDB3, ZIP3, p60, p62, p62B
Location
Chromosome 5: 179,233,388-179,265,078 forward strand.
GRCh37:CM000667.1
About this gene
This gene has 17 transcripts (splice variants) and is associated with 7 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000389805.4 | SQSTM1-001 | 2986 | 440aa | ENSP00000374455.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS34317 | C9JRJ8 E9PFW8 Q13501 | NM_003900.4 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000376929.3 | SQSTM1-201 | 2913 | 356aa | ENSP00000366128.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47355 | C9JRJ8 E9PFW8 Q13501 | NM_001142299.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000360718.5 | SQSTM1-002 | 2253 | 356aa | ENSP00000353944.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47355 | C9JRJ8 E9PFW8 Q13501 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000402874.3 | SQSTM1-202 | 2000 | 356aa | ENSP00000385553.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47355 | C9JRJ8 E9PFW8 Q13501 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000510187.1 | SQSTM1-013 | 1714 | 378aa | ENSP00000424477.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JRJ8 E7EMC7 E9PFW8 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000514093.1 | SQSTM1-015 | 842 | 167aa | ENSP00000427308.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JRJ8 E9PFW8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000422245.1 | SQSTM1-003 | 628 | 140aa | ENSP00000394534.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JRJ8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000504627.1 | SQSTM1-017 | 602 | 190aa | ENSP00000425957.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E3W990 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000508284.1 | SQSTM1-016 | 578 | 69aa | ENSP00000424195.1 | Nonsense mediated decay | D6RBF1 | - | - | |
| ENST00000453046.1 | SQSTM1-008 | 572 | 73aa | ENSP00000405061.1 | Nonsense mediated decay | C9J6J8 D6RBF1 | - | - | |
| ENST00000506690.1 | SQSTM1-010 | 2405 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000512234.1 | SQSTM1-011 | 1722 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000506042.1 | SQSTM1-014 | 921 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000481335.1 | SQSTM1-004 | 562 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000464493.1 | SQSTM1-005 | 532 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000466342.1 | SQSTM1-007 | 808 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000485412.1 | SQSTM1-006 | 656 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
