Gene: CALR ENSG00000179218

Description

calreticulin [Source:HGNC Symbol;Acc:1455]

Gene Synonyms

CRT, CRTC, FLJ26680, HEL-S-99n, RO, SSA, cC1qR

Location

Chromosome 19: 13,049,392-13,055,303 forward strand.

GRCh37:CM000681.1

About this gene

This gene has 7 transcripts (splice variants), 3 paralogues and is associated with 54 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000316448.5	CALR-001	1903	417aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12288	B4E2Y9 P27797	NM_004343.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000586760.1	CALR-006	913	163aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000588454.1	CALR-008	776	247aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586967.1	CALR-007	394	13aa	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000587486.2	CALR-003	957	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590325.1	CALR-004	781	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586803.1	CALR-005	667	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Name

CALR (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: P27797

CCDS

This gene is a member of the Human CCDS set: CCDS12288.1

Ensembl version

ENSG00000179218.9

Other assemblies

This gene maps to 12,938,578-12,944,489 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000180574 (version 1)

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Gene: CALR ENSG00000179218

Summary