Gene: CALR ENSG00000179218

Description

calreticulin [Source:HGNC Symbol;Acc:1455]

Gene Synonyms

CRT, CRTC, FLJ26680, HEL-S-99n, RO, SSA, cC1qR

Location

Chromosome 19: 13,049,392-13,055,303 forward strand.

GRCh37:CM000681.1

About this gene

This gene has 7 transcripts (splice variants), 3 paralogues and is associated with 54 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000316448.5	CALR-001	1903	417aa	ENSP00000320866.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12288	B4E2Y9 P27797	NM_004343.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586760.1	CALR-006	913	163aa	ENSP00000465918.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000588454.1	CALR-008	776	247aa	ENSP00000465105.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586967.1	CALR-007	394	13aa	ENSP00000466037.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000587486.2	CALR-003	957	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590325.1	CALR-004	781	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586803.1	CALR-005	667	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

EMBL-EBI User Survey 2024

Gene: CALR ENSG00000179218

Summary

EMBL-EBI User Survey 2024

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Gene: CALR ENSG00000179218

Summary