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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: USP42 ENSG00000106346

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Description

ubiquitin specific peptidase 42 [Source:HGNC Symbol;Acc:20068]

Gene Synonyms

FLJ12697

Location

Chromosome 7: 6,144,515-6,201,195 forward strand.

GRCh37:CM000669.1

About this gene

This gene has 7 transcripts (splice variants) and 25 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000306177.5	USP42-005	5155	1316aa	ENSP00000301962.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47535	C9JPC9 E5RJP3 Q9H9J4	NM_032172.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000426246.2	USP42-006	3611	1043aa	ENSP00000408217.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JPC9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000465073.2	USP42-008	1490	475aa	ENSP00000430568.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EWZ4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521713.1	USP42-009	5017	219aa	ENSP00000431127.1	Nonsense mediated decay		E5RJP3	-	-
ENST00000404008.2	USP42-004	1380	174aa	ENSP00000385964.2	Nonsense mediated decay		B4DP25	-	-
ENST00000451154.1	USP42-003	520	98aa	ENSP00000416910.1	Nonsense mediated decay		F8WD92	-	-
ENST00000479544.2	USP42-007	4286	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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