Description
synaptojanin 1 [Source:HGNC Symbol;Acc:11503]
Gene Synonyms
INPP5G, KIAA0910, PARK20
Location
Chromosome 21: 34,001,069-34,100,359 reverse strand.
GRCh37:CM000683.1
About this gene
This gene has 12 transcripts (splice variants), 8 paralogues and is associated with 3 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000433931.2 | SYNJ1-004 | 4852 | 1612aa | ENSP00000409667.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS33539 | C9J1Z6 J3KQV8 | NM_003895.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000382499.2 | SYNJ1-001 | 7094 | 1350aa | ENSP00000371939.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS33540 | C9J1Z6 C9JFZ1 | NM_203446.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000357345.3 | SYNJ1-202 | 7059 | 1295aa | ENSP00000349903.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54483 | B4DIP0 C9J1Z6 O43426 | NM_001160302.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000382491.3 | SYNJ1-203 | 6942 | 1526aa | ENSP00000371931.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54484 | C9J1Z6 C9JW66 J3KPK1 Q1ZYQ4 | NM_001160306.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000322229.7 | SYNJ1-201 | 4722 | 1573aa | ENSP00000322234.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J1Z6 O43426 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000438952.1 | SYNJ1-003 | 3604 | 187aa | ENSP00000388869.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000429236.1 | SYNJ1-002 | 2212 | 695aa | ENSP00000413649.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J1Z6 C9JW66 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000456084.1 | SYNJ1-006 | 583 | 178aa | ENSP00000412707.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J1Z6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000418301.1 | SYNJ1-009 | 422 | 131aa | ENSP00000387868.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000416083.1 | SYNJ1-008 | 366 | 122aa | ENSP00000413480.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000464778.1 | SYNJ1-007 | 578 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000467445.1 | SYNJ1-005 | 977 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
