Description
FYVE, RhoGEF and PH domain containing 4 [Source:HGNC Symbol;Acc:19125]
Gene Synonyms
CMT4H, FRABP, ZFYVE6, frabin
Location
Chromosome 12: 32,552,463-32,798,984 forward strand.
GRCh37:CM000674.1
About this gene
This gene has 18 transcripts (splice variants), 7 paralogues and is associated with 2 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000427716.2 | FGD4-001 | 8242 | 766aa | ENSP00000394487.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8727 | F8W1R0 J3KSS3 Q96M96 | NM_139241.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000546442.1 | FGD4-015 | 3503 | 673aa | ENSP00000446695.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8W1R0 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000534526.2 | FGD4-013 | 2977 | 903aa | ENSP00000449273.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VWL3 F8W1R0 J3KSS3 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000525053.1 | FGD4-011 | 2925 | 878aa | ENSP00000433666.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PJX4 F8W1R0 J3KSS3 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000531134.1 | FGD4-010 | 2924 | 851aa | ENSP00000431323.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z493 F8W1R0 J3KSS3 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000266482.3 | FGD4-201 | 2679 | 471aa | ENSP00000266482.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3XA97 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000472289.1 | FGD4-005 | 1629 | 207aa | ENSP00000434356.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PQT1 J3KSS3 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000381025.3 | FGD4-202 | 958 | 280aa | ENSP00000370413.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q96M96 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000583694.1 | FGD4-017 | 580 | 30aa | ENSP00000462623.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KSS3 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000493087.1 | FGD4-002 | 2987 | 235aa | ENSP00000437109.1 | Nonsense mediated decay | E9PNX0 J3KSS3 | - | - | |
| ENST00000395740.1 | FGD4-003 | 2691 | 235aa | ENSP00000379089.1 | Nonsense mediated decay | E9PNX0 J3KSS3 | - | - | |
| ENST00000551984.1 | FGD4-014 | 2435 | 40aa | ENSP00000449614.1 | Nonsense mediated decay | F8VVF1 J3KSS3 | - | - | |
| ENST00000494977.1 | FGD4-004 | 2349 | 65aa | ENSP00000434062.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000473513.1 | FGD4-008 | 559 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000550091.1 | FGD4-016 | 549 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000497153.1 | FGD4-007 | 537 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000479023.1 | FGD4-009 | 535 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000494275.1 | FGD4-006 | 1439 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
