Gene: SLC5A6 ENSG00000138074

Description

solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6 [Source:HGNC Symbol;Acc:11041]

Gene Synonyms

SMVT

Location

Chromosome 2: 27,422,455-27,435,826 reverse strand.

GRCh37:CM000664.1

About this gene

This gene has 18 transcripts (splice variants), 11 paralogues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000310574.3	SLC5A6-001	3231	635aa	ENSP00000310208.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1740	E7EMX0 E7ENG0 E7ENN0 E7EP02 E7ERE1 E7EW41 E7EW78 E7EXC0 Q9HD19 Q9Y289	NM_021095.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000408041.1	SLC5A6-003	2230	635aa	ENSP00000384853.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1740	E7EMX0 E7ENG0 E7ENN0 E7EP02 E7ERE1 E7EW41 E7EW78 E7EXC0 Q9HD19 Q9Y289	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000412471.1	SLC5A6-004	917	193aa	ENSP00000403851.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EMX0 E7ENG0 E7ENN0 E7EP02 E7ERE1 E7EW41 E7EW78 E7EXC0 Q9HD19	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000414408.1	SLC5A6-005	741	78aa	ENSP00000404032.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EP02 E7EW41 E7EXC0 Q9HD19	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000401463.1	SLC5A6-006	732	147aa	ENSP00000384265.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ENG0 E7EP02 E7ERE1 E7EW41 E7EW78 E7EXC0 Q9HD19	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000432106.1	SLC5A6-009	725	133aa	ENSP00000411536.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ENG0 E7EP02 E7ERE1 E7EW41 E7EXC0 Q9HD19	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000426119.1	SLC5A6-007	676	115aa	ENSP00000401347.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EP02 E7ERE1 E7EW41 E7EXC0 Q9HD19	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000430186.1	SLC5A6-011	599	38aa	ENSP00000399299.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EXC0 Q9HD19	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000428518.1	SLC5A6-012	570	58aa	ENSP00000402903.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EP02 E7EXC0 Q9HD19	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000442731.1	SLC5A6-010	542	27aa	ENSP00000412115.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9HD19	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000445802.1	SLC5A6-008	871	153aa	ENSP00000411361.1	Nonsense mediated decay		E7ENG0 E7ENN0 E7EP02 E7ERE1 E7EW41 E7EW78 E7EXC0 Q9HD19	-	-
ENST00000461319.1	SLC5A6-017	598	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488743.2	SLC5A6-002	3174	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461757.1	SLC5A6-018	2307	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476319.1	SLC5A6-014	842	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492069.1	SLC5A6-015	705	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464538.1	SLC5A6-013	664	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481751.1	SLC5A6-016	615	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

EMBL-EBI User Survey 2024

Gene: SLC5A6 ENSG00000138074

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EMBL-EBI User Survey 2024

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Gene: SLC5A6 ENSG00000138074

Summary